x-windows opening up too large

[J S]

An X application we run on xfree86-windowmaker is causing problems for users 
at my work because when it pops up new windows, these windows are sometimes 
too big to fit on the screen, or the scrollbar is missing.

Is there something I can do to fix this other than using ALT+left/right 
mouse clicks to resize these windows or better still stop them from opening 
up so large? Incidentally this problem doesn't happen on Exceed.

Thanks for any help.

JS.


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